Deleting the app does not change your assistant's settings, so the entry Diffchecker added at setup stays. On Windows, uninstalling Diffchecker removes these entries. On a Mac, choose Diffchecker > Uninstall Diffchecker…, which removes them and moves the app to the Trash. Before you delete the app any other way, open Preferences in Diffchecker, then Integrations, and click Disconnect all assistants.
If Diffchecker is already deleted, run claude mcp remove diffchecker for Claude Code, or codex mcp remove diffchecker for Codex.
For Claude Desktop, quit it, then delete the diffchecker entry from claude_desktop_config.json. On a Mac, the file is ~/Library/Application Support/Claude/claude_desktop_config.json. On Windows, it is in %LOCALAPPDATA%\Packages\Claude_…\LocalCache\Roaming\Claude if you have that folder, and otherwise in %APPDATA%\Claude.
If you let Diffchecker add a section to Codex's instructions, also delete the section headed "Document comparisons (added by Diffchecker Desktop)" from ~/.codex/AGENTS.md, or from %USERPROFILE%\.codex\AGENTS.md on Windows.
Or reinstall Diffchecker and uninstall it again as described above.